evolution

genetically,-central-american-mammoths-were-weird

Genetically, Central American mammoths were weird

This led a Mexican-European research collaboration to get interested in finding DNA from elsewhere in the Columbian mammoth’s range, which extended down into Central America. The researchers focused on the Basin of Mexico, which is well south of where any woolly mammoths were likely to be found. While the warmer terrain generally tends to degrade DNA more quickly, the team had a couple of things working in its favor. To begin with, there were a lot of bones. The Basin of Mexico has been heavily built up over the centuries, and a lot of mammoth remains have been discovered, including over 100 individuals during the construction of Mexico City’s international airport.

In addition, the team focused entirely on the mitochondrial genome. In contrast to the two sets of chromosomes in each cell, a typical cell might have hundreds of mitochondria, each of which could have dozens of copies of its genome. So, while the much smaller mitochondria don’t provide as much detail about ancestry, they’re at least likely to survive at high enough levels to provide something to work with.

And indeed they did. Altogether, the researchers obtained 61 new mitochondrial genomes from the mammoths of Mexico from the 83 samples they tested. Of these, 28 were considered high enough quality to perform an analysis.

Off on their own

By building a family tree using this genetic data, along with that from other Columbian and woolly mammoth samples, the researchers could potentially determine how different populations were related. And one thing became very clear almost immediately: They were in a very weird location on that tree.

To begin with, all of them clustered together in a single block, although there were three distinct groupings within that block. But the placement of that block within the larger family tree was notably strange. To begin with, there were woolly mammoths on either side of it, suggesting the lineage was an offshoot of woolly mammoths. That would make sense if all Columbian mammoths clustered together with the Mexican ones. But they don’t. Some Columbian mammoths from much farther north are actually more closely related to woolly mammoths than they are to the Mexican mammoths.

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New dinosaur species is the punk rock version of an ankylosaur

And we have known for sure that the armor was around back then, given that we’ve found the skin-derived osteoderms that comprise the armor in Jurassic deposits. But with little more than a rib and a handful of mouth parts to go on, it wasn’t really possible to say much more than that.

Until now, that is. Because the new Spicomellus remains show extremely clearly that the armor of ankylosaurs got less elaborate over time.

The small, solid-looking spikes found along the edges of later ankylosaurs? Forget those. Spicomellus had a back that was probably bristling with sharper spines, along with far larger ones along its outer edges. Each rib appears to have generated as many as six individual spikes. At a handful of locations, these spikes extended out to nearly a meter, looking more like lances than anything needed to ward off a close-in attack.

And the largest of these were along its neck. On the upper surface of its neck, several osteoderms fused to form a massive half-collar of bone and then extended out five or more individual spikes, each among the longest on the animal’s body. And there were three of these structures along the neck. “No known ankylosaur possesses any condition close to the extremely long pairs of spines on the cervical half-ring of Spicomellus,” its discoverers note.

As if its hedgehog-on-acid appearance weren’t enough, handles present on the tail vertebrae suggest that it also had a weaponized tail. All told, the researchers sum things up by saying, “The new specimen reveals extreme dermal armour modifications unlike those of any other vertebrate, extinct or extant, which fall far outside of the range of morphologies shown by other armoured dinosaurs.”

Out go the hypotheses

Because it’s so unusual, the skeleton’s characteristics are difficult to place within a neat family tree of the ankylosaurs. The researchers conclude that some details of its skeleton do suggest Spicomellus groups among the ankylosaurs and conclude that it’s probably an early branch from the main lineage. But without any other significant examples from the lineage at that time, it’s an extremely tentative conclusion. Still, the alternative is that this thing is unrelated to the only other organisms that share at least a few of its bizarre features, which is a difficult idea to swallow.

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Mammals that chose ants and termites as food almost never go back

Insects are more influential than we realize

By showing that ant- and termite-based diets evolved repeatedly, the study highlights the overlooked role of social insects in shaping biodiversity. “This work gives us the first real roadmap, and what really stands out is just how powerful a selective force ants and termites have been over the last 50 million years, shaping environments and literally changing the face of entire species,” Barden said.

However, according to the study authors, we still do not have a clear picture of how much of an impact insects have had on the history of life on our planet. Lots of lineages have been reshaped by organisms with outsize biomass—and today, ants and termites have a combined biomass exceeding that of all living wild mammals, giving them a massive evolutionary influence.

However, there’s also a flip side. Eight of the 12 myrmecophagous origins are represented by just a single species, meaning most of these lineages could be vulnerable if their insect food sources decline. As Barden put it, “In some ways, specializing in ants and termites paints a species into a corner. But as long as social insects dominate the world’s biomass, these mammals may have an edge, especially as climate change seems to favor species with massive colonies, like fire ants and other invasive social insects.”

For now, the study authors plan to keep exploring how ants, termites, and other social insects have shaped life over millions of years, not through controlled lab experiments, but by continuing to use nature itself as the ultimate evolutionary archive. “Finding accurate dietary information for obscure mammals can be tedious, but each piece of data adds to our understanding of how these extraordinary diets came to be,” Vida argued.

Evolution, 2025. DOI: 10.1093/evolut/qpaf121 (About DOIs)

Rupendra Brahambhatt is an experienced journalist and filmmaker. He covers science and culture news, and for the last five years, he has been actively working with some of the most innovative news agencies, magazines, and media brands operating in different parts of the globe.

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enigmatic-hominin-species-studied-using-2-million-year-old-proteins

Enigmatic hominin species studied using 2 million-year-old proteins

The absence of AMELY suggests that a sample is female, but it isn’t definitive. That’s both because it’s impossible to rule out some problem with identifying the protein in samples this old, and in part because some rare males (including at least one Neanderthal) carry deletions that eliminate the gene entirely.

Another key aspect is that some of the 425 amino acid locations differ between hominin species, and even individual members of Paranthropus. Thus, they can potentially serve as a diagnostic of the relationships between and within species and help address some of the confusion about how many species of Paranthropus there were and their relationship with other hominins. While it’s difficult to say too much with only four samples, the researchers found some suggestive evidence.

For example, they tested whether you might see the sort of amino acid variation found among these samples if they all belonged to the same species. This was done by randomly choosing four human genomes and examining whether they had a similar level of variation. They concluded that it was “plausible” that you’d see this level of variation among any four individuals that were chosen at random, but the population of modern humans is likely to be larger than that of Paranthropus, so the test wasn’t definitive.

Among the 425 different amino acids were 16 that had species-specific variations among hominins. Somewhat surprisingly, Paranthropus robustus is the most closely related species to our own genus, Homo, based on a tree built from these variations. Again, however, they conclude that there simply isn’t enough data available to feel confident in this conclusion.

But that should really be an “isn’t enough data yet.” We heard about this paper from regular Ars reader Enrico Cappellini, who happens to be its senior author and faculty at the University of Copenhagen’s Globe Institute. And a quick look over his faculty profile indicates that developing the techniques used here is his major research focus, so hopefully we’ll be able to expand the data available on extinct hominin species with time. The challenge, as noted in the paper, is that the technique destroys a small part of the sample, and these samples are one-of-a-kind pieces of the collective history of all of humanity.

Science, 2025. DOI: 10.1126/science.adt9539  (About DOIs).

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carnivorous-crocodile-like-monsters-used-to-terrorize-the-caribbean

Carnivorous crocodile-like monsters used to terrorize the Caribbean

How did reptilian things that looked something like crocodiles get to the Caribbean islands from South America millions of years ago? They probably walked.

The existence of any prehistoric apex predators in the islands of the Caribbean used to be doubted. While their absence would have probably made it even more of a paradise for prey animals, fossils unearthed in Cuba, Puerto Rico, and the Dominican Republic have revealed that these islands were crawling with monster crocodyliform species called sebecids, ancient relatives of crocodiles.

While sebecids first emerged during the Cretaceous, this is the first evidence of them lurking outside South America during the Cenozoic epoch, which began 66 million years ago. An international team of researchers has found that these creatures would stalk and hunt in the Caribbean islands millions of years after similar predators went extinct on the South American mainland. Lower sea levels back then could have exposed enough land to walk across.

“Adaptations to a terrestrial lifestyle documented for sebecids and the chronology of West Indian fossils strongly suggest that they reached the islands in the Eocene-Oligocene through transient land connections with South America or island hopping,” researchers said in a study recently published in Proceedings of the Royal Society B.

Origin story

During the late Eocene to early Oligocene periods of the mid-Cenozoic, about 34 million years ago, many terrestrial carnivores already roamed South America. Along with crocodyliform sebecids, these included enormous snakes, terror birds, and metatherians, which were monster marsupials. At this time, the sea levels were low, and the islands of the Eastern Caribbean are thought to have been connected to South America via a land bridge called GAARlandia (Greater Antilles and Aves Ridge). This is not the first land bridge to potentially provide a migration opportunity.

Fragments of a single tooth unearthed in Seven Rivers, Jamaica, in 1999 are the oldest fossil evidence of a ziphodont crocodyliform (a group that includes sebecids) in the Caribbean. It was dated to about 47 million years ago, when Jamaica was connected to an extension of the North American continent known as the Nicaragua Rise. While the tooth from Seven Rivers is thought to have belonged to a ziphodont other than a sebacid, that and other vertebrate fossils found in Jamaica suggest parallels with ecosystems excavated from sites in the American South.

The fossils found in areas like the US South that the ocean would otherwise separate suggest more than just related life forms. It’s possible that the Nicaragua Rise provided a pathway for migration similar to the one sebecids probably used when they arrived in the Caribbean islands.

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Some flies go insomniac to ward off parasites

Those genes associated with metabolism were upregulated, meaning they showed an increase in activity. An observed loss of body fat and protein reserves was evidently a trade-off for resistance to mites. This suggests there was increased lipolysis, or the breakdown of fats, and proteolysis, the breakdown of proteins, in resistant lines of flies.

Parasite paranoia

The depletion of nutrients could make fruit flies less likely to survive even without mites feeding off them, but their tenaciousness when it comes to staying up through the night suggests that being parasitized by mites is still the greater risk. Because mite-resistant flies did not sleep, their oxygen consumption and activity also increased during the night to levels no different from those of control group flies during the day.

Keeping mites away involves moving around so the fly can buzz off if mites crawl too close. Knowing this, Benoit wanted to see what would happen if the resistant flies’ movement was restricted. It was doom. When the flies were restrained, the mite-resistant flies were as susceptible to mites as the controls. Activity alone was important for resisting mites.

Since mites are ectoparasites, or external parasites (as opposed to internal parasites like tapeworms), potential hosts like flies can benefit from hypervigilance. Sleep is typically beneficial to a host invaded by an internal parasite because it increases the immune response. Unfortunately for the flies, sleeping would only make them an easy meal for mites. Keeping both stereoscopic eyes out for an external parasite means there is no time left for sleep.

“The pattern of reduced sleep likely allows the flies to be more responsive during encounters with mites during the night,” the researchers said in their study, which was recently published in Biological Timing and Sleep. “There could be differences in sleep occurring during the day, but these differences may be less important as D. melanogaster sleeps much less during the day.”

Fruit flies aren’t the only creatures with sleep patterns that parasites disrupt. Evidence of shifts in sleep and rest in birds and bats has been shown to happen when there is a risk of parasitism after dark. For the flies, exhaustion has the upside of better fertility if they manage to avoid bites, so a mate must be worth all those sleepless nights.

Biological Timing and Sleep, 2025.  DOI: 10.1038/s44323-025-00031-7

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newly-hatched-hummingbird-looks,-acts-like-a-toxic-caterpillar

Newly hatched hummingbird looks, acts like a toxic caterpillar

Further observation of the nest revealed that the female hummingbird had added to its hatchling’s caterpillar camouflage by lining the nest with hairy-looking material from the seeds of balsa trees. The researchers also noticed that, whenever they approached the nest to film, the chick would move its head upward and start shaking it sideways while its feathers stood on end. It was trying to make itself look threatening.

When the research team backed off, the hummingbird chick went back to laying low in its nest. They wondered whether it behaved this way with actual predators, but eventually saw a wasp known to prey on young hummingbirds creep close to the nest. The chick displayed the same behavior it had with humans, which succeeded in scaring the wasp off.

Falk determined that the feathers, color, and head-shaking were eerily similar to the larvae of moths in the Megalopygidae and Saturniidae families, which are also endemic to the region. They might not be the mirror image of a particular species, but they appear close enough that predators would consider themselves warned.

“The behavior of the white-necked jacobin, when approached by humans and a predatory wasp, resembles the sudden ‘thrashing’ or ‘jerking’ behavior exhibited by many caterpillars in response to disturbance, including in the habitat where this bird was found,” he said regarding the same study.

…now you don’t

Could there be an alternate explanation for this hummingbird cosplaying as a caterpillar? Maybe. The researchers think it’s possible that the long feathers that appear to mimic spines may have evolved as a form of crypsis, or camouflage that helps an organism blend in with its background. The balsa tree material that’s similar to the feathers obviously helped with this.

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we-probably-inherited-our-joints-from…-a-fish

We probably inherited our joints from… a fish

What do we have in common with fish, besides being vertebrates? The types of joints we (and most vertebrates) share most likely originated from the same common ancestor. But it’s not a feature that we share with all vertebrates.

Humans, other land vertebrates, and jawed fish have synovial joints. The lubricated cavity within these joints makes them more mobile and stable because it allows for bones or cartilage to slide against each other without friction, which facilitates movement.

The origin of these joints was uncertain. Now, biologist Neelima Sharma of the University of Chicago and her colleagues have taken a look at which fish form this type of joint. Synovial joints are known to be present in jawed but not jawless fish. This left the question of whether they are just a feature of bony skeletons in general or if they are also found in fish with cartilaginous skeletons, such as sharks and skates (there are no land animals with cartilaginous skeletons).

As Sharma and her team found, cartilaginous fish with jaws, such as the skate embryos they studied, do develop these joints, while jawless fish, such as lampreys and hagfish, lack them.

So what could this mean? If jawed fish have synovial joints in common with all jawed vertebrates, including us, it must have evolved in our shared ancestor.

Something fishy in our past

While the common ancestor of vertebrates with synovial joints is still a mystery, the oldest specimen with evidence of these joints is Bothriolepis canadensis, a fish that lived about 387 to 360 million years ago during the Middle to Late Devonian period.

When using CT scanning to study a Bothriolepis fossil, Sharma observed a joint cavity between the shoulder and pectoral fin. Whether the cavity was filled with synovial fluid or cartilage is impossible to tell, but either way, she thinks it appears to have functioned like a synovial joint would. Fossils of early jawless fish, in contrast, lack any signs of synovial joints.

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did-the-snowball-earth-give-complex-life-a-boost?

Did the snowball Earth give complex life a boost?

Life is complex

But when new minerals made their way to the water, what did they actually do? Cycle throughout the bottom of the ocean, delivering new elements to previously barren locations and providing energy for microbial life. At the end of the Cryogenic, these early lifeforms appear to have gotten gradually more complex, paving the way for the first known multicellular life in the ensuing Ediacaran.

“Any time there’s a really radical environmental shift, we know that’s an interesting time for evolution,” says Chris Kempes, a theoretical biophysicist at the Sante Fe Institute who was not involved in the research. For example, when temperatures drop or less sunlight is available, organisms’ speed and metabolic rates generally slow down, creating new pressures on life, Kempes’ research has found. Halverson thinks the extreme habitats that life had to endure during the snowballs played more of a role in shaping evolution than the nutrient flushes from glaciers.

Even so, studies like Kirkland’s that try to understand how nutrients and energy availability changed throughout history are “the key to understanding when and why there are major evolutionary transitions,” Kempes says.

To determine what other minerals may have been key players in the ancient oceans, Kirkland hopes to look at rocks called apatites, which contain oxygen and other elements like strontium and phosphorus. However, these break down much easier than zircon-rich rocks, meaning they are less stable through long stretches of time.

Though the global changes of the Cryogenic happened eons ago, Kirkland sees parallels with the wide-scale climate changes of today. “The atmosphere, the land, and the oceans are all interconnected,” he says. “Understanding these [ancient] cycles gives us information about how more modern cycles on the planet may work.”

Geology, 2025.  DOI:  10.1130/G52887.1

Hannah Richter is a freelance science journalist and graduate of MIT’s Graduate Program in Science Writing. She primarily covers environmental science and astronomy. 

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medicine-nobel-goes-to-previously-unknown-way-of-controlling-genes

Medicine Nobel goes to previously unknown way of controlling genes

Based on the stereotypical hairpin structure, researchers have scanned genomes and found over 38,000 likely precursors; nearly 50,000 mature microRNAs have been discovered by sequencing all the RNA found in cells from a variety of species. While found widely in animals, they’ve also been discovered in plants, raising the possibility that they existed in a single-celled ancestral organism.

While some microRNA genes, including lin-4 and let-7, have dramatic phenotypes when mutated, many have weak or confusing effects. This is likely in part due to the fact that a single microRNA can bind to and regulate a variety of genes and so may have a mix of effects when mutated. In other cases, several different microRNAs may bind to the same messenger RNA, creating a redundancy that makes the loss of a single microRNA difficult to detect.

Nevertheless, there’s plenty of evidence that, collectively, they’re essential for normal development in many organisms and tissues. Knocking out the gene that encodes the Dicer protein, which is needed for forming mature microRNAs, causes early embryonic lethality. Knockouts of the gene in specific cell types cause a variety of defects. For example, B cells never mature if Dicer is lost in that cell lineage, and a knockout in nerve cells causes microcephaly and limiting branching of connections among neurons, leading the animals to die shortly after birth.

This being the Medicine prize, the Nobel Committee also cite a number of human genetic diseases that are caused by mutations in microRNA genes.

Overall, the award highlights just how complex life is at the cellular level. There’s a fair number of genes that have to be made by every cell simply to enable their survival. But as for the rest, they exist embedded in complex regulatory networks that interact to ensure that proteins are made only where and when they’re needed, and often degraded if they somehow get made anyway. And every now and then, fundamental research in an oddball species is still telling us unexpected things about those networks.

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ants-learned-to-farm-fungi-during-a-mass-extinction

Ants learned to farm fungi during a mass extinction

Timing is everything

Tracing the lineages of agricultural ants to their most recent common ancestor revealed that the ancestor probably lived through the end-Cretaceous mass extinction—the one that killed off the dinosaurs. The researchers argue that the two were almost certainly related. Current models suggest that there was so much dust in the atmosphere after the impact that set off the mass extinction that photosynthesis shut down for nearly two years, meaning minimal plant life. By contrast, the huge amount of dead material would allow fungi to flourish. So, it’s not surprising that ants started to adapt to use what was available to them.

That explains the huge cluster of species that cooperate with fungi. However, most of the species that engage in organized farming don’t appear until roughly 35 million years after the mass extinction, at the end of the Eocene (that’s about 33 million years before the present period). The researchers suggest that the climate changes that accompanied the transition to the Oligocene included a drying out of the tropical Americas, where the fungus-farming ants had evolved. This would cut down on the availability of fungi in the wild, potentially selecting for the ability of species that could propagate fungal species on their own.

This also corresponds to the origins of the yeast strains used by farming ants, as well as the most specialized agricultural fungal species. But it doesn’t account for the origin of coral fungus farmers, which seems to have occurred roughly 10 million years later.

The work gives us a much clearer picture of the origin of agriculture in ants and some reasonable hypotheses regarding the selective pressures that might have led to its evolution. In the long term, however, the biggest advance here may be the resources generated during this study. Ultimately, we’d like to understand the genetic basis for the changes in the ants’ behavior, as well as how the fungi have adapted to better provide for their farmers. To do that, we’ll need to compare the genomes of agricultural species with their free-living relatives. The DNA gathered for this study will ultimately be needed to pursue those questions.

Science, 2024. DOI: 10.1126/science.adn7179  (About DOIs).

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Remembering where your meals came from key for a small bird’s survival

Where’d I leave that again? —

For small birds, remembering where the food is beats forgetting when it’s gone.

a small, black and grey bird perched on the branch of a fir tree.

It seems like common sense that being smart should increase the chances of survival in wild animals. Yet for a long time, scientists couldn’t demonstrate that because it was unclear how to tell exactly if a lion or a crocodile or a mountain chickadee was actually smart or not. Our best shots, so far, were looking at indirect metrics like brain size or doing lab tests of various cognitive skills such as reversal learning, an ability that can help an animal adapt to a changing environment.

But a new, large-scale study on wild mountain chickadees, led by Joseph Welklin, an evolutionary biologist at the University of Nevada, showed that neither brain size nor reversal learning skills were correlated with survival. What mattered most for chickadees, small birds that save stashes of food, was simply remembering where they cached all their food. A chickadee didn’t need to be a genius to survive; it just needed to be good at its job.

Testing bird brains

“Chickadees cache one food item in one location, and they do this across a big area. They can have tens of thousands of caches. They do this in the fall and then, in the winter, they use a special kind of spatial memory to find those caches and retrieve the food. They are little birds, weight is like 12 grams, and they need to eat almost all the time. If they don’t eat for a few hours, they die,” explains Vladimir Pravosudov, an ornithologist at the University of Nevada and senior co-author of the study.

The team chose the chickadees to study the impact cognitive skills had on survival because the failure to find their caches was their most common cause of death. This way, the team hoped, the impact of other factors like predation or disease would be minimized.

First, however, Welklin and his colleagues had to come up with a way to test cognitive skills in a fairly large population of chickadees. They did it by placing a metal square with two smart feeders attached to each side among the trees where the chickadees lived. “The feeders were equipped with RFID receivers that recognized the signal whenever a chickadee, previously marked with a microchip-fitted leg band, landed near them and opened the doors to dispense a single seed,” Welklin says. After a few days spent getting the chickadees familiar with the door-opening mechanism, the team started running tests.

The first task was aimed at testing how good different chickadees were at their most important job: associating a location with food and remembering where it was. To this end, each of the 227 chickadees participating in the study was assigned just one feeder that opened when they landed on it; all the other feeders remained closed. A chickadee’s performance was measured by the number of trials it needed to figure out which feeder would serve it, and how many errors (landings on the wrong feeders) it made over four days. “If you were to find the right feeder at random, it should take you 3.5 trials on average. All the birds learned and performed way better than chance,” Pravosudov says.

The second task was meant to test reversal learning skills, widely considered the best predictor of survival. Once the chickadees learned the location of the reward-dispensing feeders, the locations were changed. The goal was to see how fast the birds would adapt to this change.

Once the results of both tests were in, the team monitored the birds using their microchip bands, catching them and changing the bands every year, for over six years. “Part of the reason that’s never been done in the past is just because it takes so much work,” says Welklin. But the work paid off in the end.

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