Biology

humans-are-living-longer-than-ever-no-matter-where-they-come-from 

Humans are living longer than ever no matter where they come from 

Live long and prosper? —

Disease outbreaks and human conflicts help dictate regional differences in longevity.

An older person drinking coffee in an urban environment.

Most of us want to stay on this planet as long as possible. While there are still differences depending on sex and region, we are now living longer as a species—and it seems life spans will only continue to grow longer.

Researcher David Atance of Universidad de Alcalá, Spain, and his team gathered data on the trends of the past. They then used their findings to project what we can expect to see in the future. Some groups have had it harder than others because of factors such as war, poverty, natural disasters, or disease, but the researchers found that morality and longevity trends are becoming more similar regardless of disparities between sexes and locations.

“The male-female gap is decreasing among the [clusters],” they said in a study recently published in PLOS One.

Remembering the past

The research team used specific mortality indicators—such as life expectancy at birth and most common age at death–to identify five global clusters that reflect the average life expectancy in different parts of the world. The countries in these clusters changed slightly from 1990 to 2010 and are projected to change further by 2030 (though 2030 projections are obviously tentative). Data for both males and females was considered when deciding which countries belonged in which cluster during each period. Sometimes, one sex thrived while the other struggled within a cluster—or even within the same country.

Clusters that included mostly wealthier countries had the best chance at longevity in 1990 and 2010. Low-income countries predictably had the worst mortality rate. In 1990, these countries, many of which are in Africa, suffered from war, political upheaval, and the lethal spread of HIV/AIDS. Rwanda endured a bloody civil war during this period. Around the same time, Uganda had tensions with Rwanda, as well as Sudan and Zaire. In the Middle East, the Gulf War and its aftermath inevitably affected 1990 male and female populations.

Along with a weak health care system, the factors that gave most African countries a high mortality rate were still just as problematic in 2010. In all clusters, male life spans tended to differ slightly less between countries than female life spans. However, in some regions, there were differences between how long males lived compared to females. Mortality significantly increased in 1990 male populations from former Soviet countries after the dissolution of the Soviet Union, and this trend continued in 2010. Deaths in those countries were attributed to violence, accidents, cardiovascular disease, alcohol, an inadequate healthcare system, poverty, and psychosocial stress.

Glimpsing the future

2030 predictions must be taken with caution. Though past trends can be good indicators of what is to come, trends do not always continue. While things may change between now and 2030 (and those changes could be drastic), these estimates project what would happen if past and current trends continue into the relatively near future.

Some countries might be worse off in 2030. The lowest-income, highest-mortality cluster will include several African countries that have been hit hard with wars as well as political and socioeconomic challenges. The second low-income, high-mortality cluster, also with mostly African countries, will now add some Eastern European and Asian countries that suffer from political and socioeconomic issues most have recently been involved in conflicts and wars or still are, such as Ukraine.

The highest-income, lowest-mortality cluster will gain some countries. These include Chile, which has made strides in development that are helping people live longer.

Former Soviet countries will probably continue to face the same issues they did in 1990 and 2010. They fall into one of the middle-income, mid-longevity clusters and will most likely be joined by some Latin American countries that were once in a higher bracket but presently face high levels of homicide, suicide, and accidents among middle-aged males. Meanwhile, there are some other countries in Latin America that the research team foresees as moving toward a higher income and lower mortality rate.

Appearances can be deceiving

The study places the US in the first or second high-income, low-mortality bracket, depending on the timeline. This could make it look like it is doing well on a global scale. While the study doesn’t look at the US specifically, there are certain local issues that say otherwise.

A 2022 study by the Centers for Disease Control and Prevention suggests that pregnancy and maternal care in the US is abysmal, with a surprisingly high (and still worsening) maternal death rate of about 33 deaths per 100,000 live births. This is more than double what it was two decades ago. In states like Texas, which banned abortion after the overturn of Roe v. Wade, infant deaths have also spiked. The US also has the most expensive health care system among high-income countries, which was only worsened by the pandemic.

The CDC also reports that life expectancy in the US keeps plummeting. Cancer, heart disease, stroke, drug overdose, and accidents are the culprits, especially in middle-aged Americans. There has also been an increase in gun violence and suicides. Guns have become the No. 1 killer of children and teens, which used to be car accidents.

Whether the US will stay in that top longevity bracket is also unsure, especially if maternal death rates keep rising and there aren’t significant improvements made to the health care system. There and elsewhere, there’s no way of telling what will actually happen between now and 2030, but Atance and his team want to revisit their study then and compare their estimates to actual data. The team is also planning to further analyze the factors that contribute to longevity and mortality, as well as conduct surveys that could support their predictions. We will hopefully live to see the results.

PLOS One, 2024. DOI:  10.1371/journal.pone.0295842

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our-oldest-microbial-ancestors-were-way-ahead-of-their-time

Our oldest microbial ancestors were way ahead of their time

Going Golgi —

Specialized internal structures were present over 1.5 billion years ago.

computer generated image of membrane structures inside a cell

Enlarge / The Golgi apparatus, shown here in light green, may have been involved in building internal structures in cells.

ARTUR PLAWGO / SCIENCE PHOTO LIBRARY

Before Neanderthals and Denisovans, before vaguely humanoid primates, proto-mammals, or fish that crawled out of the ocean to become the first terrestrial animals, our earliest ancestors were microbes.

More complex organisms like ourselves descend from eukaryotes, which have a nuclear membrane around their DNA (as opposed to prokaryotes, which don’t). Eukaryotes were thought to have evolved a few billion years ago, during the late Palaeoproterozoic period, and started diversifying by around 800 million years ago. Their diversification was not well understood. Now, a team of researchers led by UC Santa Barbara paleontologist Leigh Ann Riedman discovered eukaryote microfossils that are 1.64 billion years old, yet had already diversified and had surprisingly sophisticated features.

“High levels of eukaryotic species richness and morphological disparity suggest that although late Palaeoproterozoic [fossils] preserve our oldest record of eukaryotes, the eukaryotic clade has a much deeper history,” Riedman and her team said in a study recently published in Papers in Paleontology.

Really, really, really old tricks

During the late Palaeoproterozoic, eukaryotes most likely evolved in the wake of several major changes on Earth, including a drastic increase in atmospheric oxygen and shifts in ocean chemistry. This could have been anywhere from 3 billion to 2.3 billion years ago. Riedman’s team explored the layers of sedimentary rock in the Limbunya region of Australia’s Birrindudu basin. The fossils they unearthed included a total of 26 taxa, as well as 10 species that had not been described before. One of them is Limbunyasphaera operculata, a species of the new genus Limbunyasphera.

What makes L. operculata so distinct is that it has a feature that appears to be evidence of a survival mechanism used by modern eukaryotes. There are some extant microbes that form a protective cyst so they can make it through harsh conditions. When things are more tolerable, they produce an enzyme that dissolves a part of the cyst wall into an opening, or pylome, that makes it possible for them to creep out. This opening also has a lid, or operculum. These were both observed in L. operculata.

While splits in fossilized single-cell organisms may be the result of taphonomic processes that break the cell wall, complex structures such as a pylome and operculum are not found in prokaryotic organisms, and therefore suggest that a species must be eukaryotic.

Didn’t know they could do that

Some of the previously known species of extinct eukaryotes also surprised the scientists with unexpectedly advanced features. Satka favosa had a vesicle in the cell that was enclosed by a membrane with platelike structures. Another species, Birrindudutuba brigandinia, also had plates identified around its vesicles, although none of its plates were as diverse in shape as those seen in different S. favosa individuals. Those plates came in a large variety of shapes and sizes, which could mean that what has been termed S. favosa is more than one species.

The plated vesicle of S. favosa is what led Riedman to determine that the species must have been eukaryotic, because the plates are possible indicators that Golgi bodies existed in these organisms. After the endoplasmic reticulum of a cell synthesizes proteins and lipids, Golgi bodies process and package those substances depending on where they have to go next. Riedman and her team think that Golgi or Golgi-like bodies transported materials within the cell to form plates around vesicles, such as the ones seen in S. favosa. The hypothetical Golgi bodies themselves are not thought to have had these plates.

This sort of complex sorting of cellular contents is a feature of all modern eukaryotes. “Taxa including Satka favosa… are considered [eukaryotes] because they have a complex, platy vesicle construction,” the researchers said in the study. These new fossils suggest that it arose pretty early in their history.

Eukaryotes have evidently been much more complex and diverse than we thought for hundreds of millions of years longer than we thought. There might be even older samples out there. While fossil evidence of eukaryotes from near their origin eludes us, samples upwards of a billion years old, such as those found by Riedman and her team, are telling us more than ever about their—and therefore our—evolution.

Papers in Paleontology, 2023.  DOI: 10.1002/spp2.1538

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clownfish-“count”-white-stripes-to-determine-if-an-invader-is-friend-or-foe

Clownfish “count” white stripes to determine if an invader is friend or foe

Counting Nemo —

They attacked similar fish with three stripes more often than those with one or two stripes.

Clown anemonefish (Amphiprion ocellaris) photographed in the wild.

Enlarge / Clown anemonefish (Amphiprion ocellaris) seem to recognize different species of clownfish by counting white stripes.

Kina Hayashi

Many people tend to think of clownfish, with their distinctive white bars against an orange, red, or black background, as a friendly sort of fish, perhaps influenced to some extent by the popular Pixar film Finding Nemo. But clownfish can be quite territorial when it comes to defending their host anemone from intrusion by others, particularly those from their own species. A new paper published in the Journal of Experimental Biology describes how clownfish determine if a fish approaching their home is friend or foe by “counting” the number of white bars or stripes on their bodies.

As previously reported, mathematical ability is often considered uniquely human, but in fact, scientists have found that many animal species—including lions, chimpanzees, birds, bees, ants, and fish—seem to possess at least a rudimentary counting ability or number sense. Crows can understand the concept of zero. So can bees, which can also add and subtract, as can both stingrays and cichlids—at least for a small number of objects (in the range of one to five). Some ants count their steps.

This so-called “numerosity” simply refers to the number of things in a set, according to cognitive psychologist Brian Butterworth, an emeritus professor at University College London and author of Can Fish Count? What Animals Reveal About Our Uniquely Mathematical Minds. It has nothing to do with reasoning or logical mathematical intelligence. This is information that will be in the environment, and counting animals must have some mechanism for extracting this numerical information from the environment. But it nonetheless makes for a fascinating field of study.

In 2022, Kina Hayashi of the Okinawa Institute of Science and Technology (OIST) and several colleagues found that clownfish display more aggressive behavior (e.g., chasing or biting) toward fish (or fish toys) with vertical bar patterns compared with fish with horizontal stripe patterns and that this aggressive behavior lasted longer when directed at fish with vertical bars versus horizontal bars. This behavior appears to influence the position of fish species between host anemones and coral reefs: No fish with vertical bars sought shelter in host anemones, while several species with vertical bars were found in the surrounding coral reefs. But it wasn’t clear how the fish recognized the color patterns or what basic rules controlled this signaling. The study results suggested that it wasn’t based on the mere presence of white bars or how much white color was present on a given fish’s body.

The plastic models used to measure the clown anemonefish’s aggressive behavior.

Enlarge / The plastic models used to measure the clown anemonefish’s aggressive behavior.

This new study builds on that earlier work. This time around, Kayashi and co-authors raised a school of young common clownfish (A. ocellaris) from eggs to ensure that the fish had never set eyes on other species of anemonefish. At six months old, the fish were introduced to several other clownfish species, including Clarke’s anemonefish (A. clarkii), orange skunk clownfish (A. sandaracinos), and saddleback clownfish (A. polymnus).

The researchers placed different species of clownfish, with different numbers of white bars, in small cases inside a tank with a clownfish colony and filmed their reaction. Because they were in a controlled tank environment, there was no chasing or biting. Rather, aggressive behavior was defined as staring aggressively at the other fish and circling the case in which the other fish were held.

They followed up with a second set of experiments in which they presented a colony of clownfish with different plastic models painted with accurate clownfish coloration, with differing numbers of white stripes. The researchers also filmed and measured the degree of aggressive behavior directed at the different plastic models.

Clownfish showing aggression toward another fish with similar stripes. Credit: Kina Hayashi

The results: “The frequency and duration of aggressive behaviors in clown anemonefish was highest toward fish with three bars like themselves,” said Hayashi, “while they were lower with fish with one or two bars, and lowest toward those without vertical bars, which suggests that they are able to count the number of bars in order to recognize the species of the intruder.”

Hayashi et al. cautioned that one limitation of their study is that all the fish used in the experiments were hatched and raised in an environment where they had only encountered other fish of their own species. So, they could not conclusively determine whether the observed behavior was innate or learned. Other species of clownfish also use the same anemone species as hosts, so aggressive behavior toward those species might be more frequent in the wild than observed in the laboratory tank environment.

Journal of Experimental Biology, 2024. DOI: 10.1242/jeb.246357  (About DOIs).

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should-you-flush-with-toilet-lid-up-or-down?-study-says-it-doesn’t-matter

Should you flush with toilet lid up or down? Study says it doesn’t matter

Whether the toilet lid is up or down doesn't make much difference in the spread of airborne bacterial and viral particles.

Enlarge / Whether the toilet lid is up or down doesn’t make much difference in the spread of airborne bacterial and viral particles.

File this one under “Studies We Wish Had Let Us Remain Ignorant.” Scientists at the University of Arizona decided to investigate whether closing the toilet lid before flushing reduces cross-contamination of bathroom surfaces by airborne bacterial and viral particles via “toilet plumes.” The bad news is that putting a lid on it doesn’t result in any substantial reduction in contamination, according to their recent paper published in the American Journal of Infection Control. The good news: Adding a disinfectant to the toilet bowl before flushing and using disinfectant dispensers in the tank significantly reduce cross-contamination.

Regarding toilet plumes, we’re not just talking about large water droplets that splatter when a toilet is flushed. Even smaller droplets can form and be spread into the surrounding air, potentially carrying bacteria like E. coli or a virus (e.g., norovirus) if an infected person has previously used said toilet. Pathogens can linger in the bowl even after repeated flushes, just waiting for their chance to launch into the air and spread disease. That’s because larger droplets, in particular, can settle on surfaces before they dry, while smaller ones travel further on natural air currents.

The first experiments examining whether toilet plumes contained contaminated particles were done in the 1950s, and the notion that disease could be spread this way was popularized in a 1975 study. In 2022, physicists and engineers at the University of Colorado, Boulder, managed to visualize toilet plumes of tiny airborne particles ejected from toilets during a flush using a combination of green lasers and cameras. It made for some pretty vivid video footage:

Colorado researchers managed to visualize toilet plumes in 2022 using green lasers and strategically placed cameras.

“If it’s something you can’t see, it’s easy to represent it doesn’t exist,” study co-author John Grimaldi said at the time. They found that the ejected airborne particles could travel up to 6.6 feet per second, reaching heights of 4.9 feet above the toilet within 8 seconds. And if those particles were smaller (less than 5 microns), they could hang around in that air for over a minute.

More relevant to this latest paper, it’s been suggested that closing the lid before flushing could substantially reduce the airborne spread of contaminants. For example, in 2019, researchers at University College Cork deployed bioaerosol sensors in a shared lavatory for a week to monitor the number and size of contaminant particles. They concluded that flushing with the toilet lid down reduced airborne droplets between 30 and 60 percent. But this scenario also increased the diameter of the droplets and bacteria concentration. Leaving the lid down also means the airborne microdroplets are still detectable 16 minutes after flushing, 11 minutes longer than if one flushed with the lid up.

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gotta-go?-we’ve-finally-found-out-what-makes-urine-yellow

Gotta go? We’ve finally found out what makes urine yellow

It isn’t from eating corn —

The yellow color comes from bacteria metabolizing waste from red blood cells.

Image of a series of scientific sample tubes filled with yellow liquids.

There are many mysteries in life that we end up shrugging off. Why is urine yellow? It just is, right? Rather than flush that 125-year-old question down the toilet, scientists sought out the answer, discovering a previously unknown microbial enzyme was to blame.

The enzyme that has eluded us for so long is now known as bilirubin reductase. It was identified by researcher and assistant professor Brantley Hall of the University of Maryland, who was part of a team based at the university and the National Institutes of Health.

Bilirubin is an orange pigment released by red blood cells after they die. Gut microbes then use bilirubin reductase to break down bilirubin into colorless urobilinogen, which degrades into yellowish urobilin, giving urine that infamous hue. While urobilin previously had an association with the color of urine, the enzyme that starts the process by producing urobilinogen was unknown until now.

“Though it was previously thought that multiple enzymes were involved in the reduction of bilirubin, our results support the finding that a single enzyme performs the reduction of bilirubin to urobilinogen,” the research team said in a study recently published in Nature Microbiology.

Gut feeling

Because some gut bacteria had been known to reduce bilirubin, Hall and his team knew where to start but wanted to fill in the unknowns by finding out which particular species actually do this—and how. This meant they had to find the gene responsible for encoding bilirubin reductase.

Previous studies had found that the species Clostridiodes difficile was capable of reducing bilirubin (though the mechanism it used was unknown). Using C. difficile as a basis for comparison, the team cultured different species of gut bacteria and exposed them to bilirubin to see whether that bacteria could produce urobilinogen, detecting its presence using a fluorescence assay.

The fluorescence assay told Hall and his colleagues that there were nine strains within the tested species that they thought were capable of reducing bilirubin, although how these bacteria were breaking it down was still unclear.  After the fluorescence assay, the genomes of the most closely related strains were analyzed,  and several turned out to share a gene that encoded an enzyme that could reduce bilirubin—bilirubin reductase.

Bacterial strains that metabolized bilirubin using bilirubin reductase all came from species that were found to belong to a single clade (the researchers informally referred to it as the bilirubin reductase clade). Within that clade, most of these species are from the class Clostridia in the phylum Firmicutes, a phylum of bacteria important to gut health.

More than … you know

The discovery of bilirubin reductase goes beyond the origin of urine color. After identifying the enzyme, the researchers found out that, while bilirubin reductase is present in healthy adults, there is a deficit in newborns and adults with inflammatory bowel disease, which could eventually influence future treatments

By sequencing infant gut genomes, Hall and his team saw that bilirubin reductase was often missing during the first few months of life. Too much bilirubin building up in the blood turns the skin and the whites of the eyes yellow, a symptom known as jaundice. Most infants have some level of jaundice, but it usually goes away on its own.

The absence of bilirubin reductase is also associated with pigmented gallstones in adults with inflammatory bowel disease (inflammatory bowel disease or IBD is a general term that can refer to several different diagnoses). Sequencing adult gut genomes showed that there was a deficit of this enzyme in most patients with Crohn’s disease or ulcerative colitis whose gut genomes were sequenced.

“With the knowledge of the species, genes, and enzymes involved in bilirubin reduction, future research can now focus on the extent to which gut microbial bilirubin metabolism affects…the role of bilirubin reduction in health and disease,” the researchers said in the same study.

There is still more research to be done on bilirubin reductase and the health implications it could have. The team thinks there may be a link between the amount of urobilin produced in the body and insulin resistance, obesity, heart disease, and even heart failure. Next to that, we finally know why urine is yellow.

Nature Microbiology, 2023. DOI: 10.1038/s41564-023-01549-x

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novel-camera-system-lets-us-see-the-world-through-eyes-of-birds-and-bees

Novel camera system lets us see the world through eyes of birds and bees

A fresh perspective —

It captures natural animal-view moving images with over 90 percent accuracy.

A new camera system and software package allows researchers and filmmakers to capture animal-view videos. Credit: Vasas et al., 2024.

Who among us hasn’t wondered about how animals perceive the world, which is often different from how humans do so? There are various methods by which scientists, photographers, filmmakers, and others attempt to reconstruct, say, the colors that a bee sees as it hunts for a flower ripe for pollinating. Now an interdisciplinary team has developed an innovative camera system that is faster and more flexible in terms of lighting conditions than existing systems, allowing it to capture moving images of animals in their natural setting, according to a new paper published in the journal PLoS Biology.

“We’ve long been fascinated by how animals see the world. Modern techniques in sensory ecology allow us to infer how static scenes might appear to an animal,” said co-author Daniel Hanley, a biologist at George Mason University in Fairfax, Virginia. “However, animals often make crucial decisions on moving targets (e.g., detecting food items, evaluating a potential mate’s display, etc.). Here, we introduce hardware and software tools for ecologists and filmmakers that can capture and display animal-perceived colors in motion.”

Per Hanley and his co-authors, different animal species possess unique sets of photoreceptors that are sensitive to a wide range of wavelengths, from ultraviolet to the infrared, dependent on each animal’s specific ecological needs. Some animals can even detect polarized light. So every species will perceive color a bit differently. Honeybees and birds, for instance, are sensitive to UV light, which isn’t visible to human eyes. “As neither our eyes nor commercial cameras capture such variations in light, wide swaths of visual domains remain unexplored,” the authors wrote. “This makes false color imagery of animal vision powerful and compelling.”

However, the authors contend that current techniques for producing false color imagery can’t quantify the colors animals see while in motion, an important factor since movement is crucial to how different animals communicate and navigate the world around them via color appearance and signal detection. Traditional spectrophotometry, for instance, relies on object-reflected light to estimate how a given animal’s photoreceptors will process that light, but it’s a time-consuming method, and much spatial and temporal information is lost.

Peacock feathers through eyes of four different animals: (a) a peafowl; (b) humans; (c) honeybees; and (d) dogs. Credit: Vasas et al., 2024.

Multispectral photography takes a series of photos across various wavelengths (including UV and infrared) and stacks them into different color channels to derive camera-independent measurements of color. This method trades some accuracy for better spatial information and is well-suited for studying animal signals, for instance, but it only works on still objects, so temporal information is lacking.

That’s a shortcoming because “animals present and perceive signals from complex shapes that cast shadows and generate highlights,” the authors wrote. ‘These signals vary under continuously changing illumination and vantage points. Information on this interplay among background, illumination, and dynamic signals is scarce. Yet it forms a crucial aspect of the ways colors are used, and therefore perceived, by free-living organisms in natural settings.”

So Hanley and his co-authors set out to develop a camera system capable of producing high-precision animal-view videos that capture the full complexity of visual signals as they would be perceived by an animal in a natural setting. They combined existing methods of multispectral photography with new hardware and software designs. The camera records video in four color channels simultaneously (blue, green, red, and UV). Once that data has been processed into “perceptual units,” the result is an accurate video of how a colorful scene would be perceived by various animals, based on what we know about which photoreceptors they possess. The team’s system predicts the perceived colors with 92 percent accuracy. The cameras are commercially available, and the software is open source so that others can freely use and build on it.

The video at the top of this article depicts the colors perceived by honeybees watching fellow bees foraging and interacting (even fighting) on flowers—an example of the camera system’s ability to capture behavior in a natural setting. Below, Hanley applies UV-blocking sunscreen in the field. His light-toned skin looks roughly the same in human vision and honeybee false color vision “because skin reflectance increases progressively at longer wavelengths,” the authors wrote.

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megalodon-wasn’t-as-chonky-as-a-great-white-shark,-experts-say

Megalodon wasn’t as chonky as a great white shark, experts say

Still a pretty impressive size —

Fresh evidence points to megalodon being longer, more slender than previous depictions.

These are the kinds of shark teeth discovered in burial sites and other ceremonial remains of the inland Maya communities. From left to right, there's a fossilized megalodon tooth, great white shark tooth, and bull shark tooth.

Enlarge / These are the kinds of shark teeth discovered in burial sites and other ceremonial remains of the inland Maya communities. From left to right, there’s a fossilized megalodon tooth, great white shark tooth, and bull shark tooth.

Antiquity

The megalodon, a giant shark that went extinct some 3.6 million years ago, is famous for its utterly enormous jaws and correspondingly huge teeth. Recent studies have proposed that the megalodon was robust species of shark akin to today’s great white sharks, only three times longer. And just like the great white shark inspired Jaws, the megalodon has also inspired a 1997 novel and a blockbuster film (2018’s The Meg)—not to mention a controversial bit of “docu-fiction” on the Discovery Channel.  But now a team of 26 shark experts are challenging the great white shark comparison, arguing that the super-sized creature’s body was more slender and possibly even longer than researchers previously thought in a new paper published in the journal Paleontologia Electronica.

“Our study suggests that the modern great white shark may not necessarily serve as a good modern analogue for assessing at least certain aspects of its biology, including its size,” co-author Kenshu Shimada, a palaeobiologist at DePaul University in Chicago, told The Guardian. “The reality is that we need the discovery of at least one complete megalodon skeleton to be more confident about its true size as well its body form.” Thus far, nobody has found a complete specimen, only fossilized teeth and vertebrae.

As previously reported, the largest shark alive today, reaching up to 20 meters long, is the whale shark, a sedate filter feeder. As recently as 4 million years ago, however, sharks of that scale likely included the fast-moving predator megalodon (formally Otodus megalodon). Due to incomplete fossil data, we’re not entirely sure how large megalodons were and can only make inferences based on some of their living relatives, like the great white and mako sharks.

Thanks to research published last year on its fossilized teeth, we’re now fairly confident that it shared something else with these relatives: it wasn’t entirely cold-blooded and apparently kept its body temperature above that of the surrounding ocean. Most sharks, like most fish, are ectothermic, meaning that their body temperatures match those of the surrounding water. But a handful of species, part of a group termed mackerel sharks, are endothermic: They have a specialized pattern of blood circulation that helps retain some of the heat their muscles produce. This enables them to keep some body parts at a higher temperature than their surroundings. A species called the salmon shark can maintain a body temperature that’s 20° C warmer than the sub-Arctic waters that it occupies.

Megalodon is also a mackerel shark, and some scientists have suggested that it, too, must have been at least partially endothermic to have maintained its growth rates in the varied environments that it inhabited. The 2023 study measured isotope clumping—which can provide an estimate of the temperature at which a material formed—in mastodon teeth. They confirmed that the megalodon samples were consistently warmer, with an average temperature difference of about 7° C compared to cold-blooded samples.

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with-fewer-pollinators,-plants-are-cutting-back-on-nectar-production

With fewer pollinators, plants are cutting back on nectar production

I can handle this myself —

Fewer pollinators means more self-pollination, less food for bees.

Image of a field of multi-colored flowers.

In a striking experiment, scientists from the French Centre Nationale de la Recherche Scientifique (CNRS) and the University of Montpellier have observed the impact of selective pressure on a flowering plant. By comparing the pansy flower variety of today that grows in the Paris region to those regrown from the seeds of the same variety collected in the 1990s and 2000s, the researchers have observed notable differences.

According to the study’s co-author, Pierre-Oliver Cheptou, the plant’s evolution over this period has resulted in a 25 percent increase in self-pollination (or selfing) in modern two plants. “We also noticed a 10 percent decrease in the flower size and a 20 percent reduction in the nectar production, which suggests the decrease in rewards for pollinators such as bumblebees,” he said.

To confirm this outcome, Cheptou and his colleagues conducted behavioral tests involving bumblebees “which preferred the ancestor plants,” Cheptou said.

He added that the study showed the impact of pollinators’ decline on the reproductive system in these plants.

When mom and dad are the same plant

Elaborating on the experiment techniques, the study’s lead author, Samson Acoca-Pidolle, said the researchers used “resurrection ecology,” which involved using plant seeds from the 1990s and 2000s that were picked from the fields in the Paris region and stored in fridges in two botanical conservatories. “In 2021, we went to the same fields to collect the seeds of the descendants of the same flowering plant,” he said. For the study, all the plants were cultivated in a greenhouse at the same time of year to ensure consistency.

Cheptou said that to determine the selfing rates of the ancestor and descendant varieties, the team used a classical molecular technique that involved measuring the frequency at which individual plants had stretches of chromosomes with identical versions of genes. This happens often in selfing since the maternal and paternal copies of a chromosome come from the same individual.

According to Acoca-Pidolle, the research team was surprised at the rapidity of the plant’s evolution in the natural environment. “It seems that the pollinators’ decline is already strong, and there is already selective pressure on this species. The other significance of the result is that we are currently observing the breakdown in the plant-pollinator interaction for this species,” he added.

Acoca-Pidolle said the study suggests that the decline of pollinators could become self-reinforcing. “If plants produce less nectar, we can predict that pollinators will have less food and this could increase the pollinator decline,” he said.

Everything is a trade-off

This adaptation may not necessarily turn out to be beneficial for the plant. “It depends on the time scale we are considering this adaptation as an answer to the selective pressure. In the long term, we know that selfing species have a higher extinction rate than out-crossing species,” he said.

Although this study was restricted to a single plant species, Cheptou suspects a similar evolutionary adaptation could be taking place in other species, too. “For plants that can practice at least a little selfing, we should expect this result. But this has to be checked by experiments,” he said.

According to Cheptou, future research should investigate if a similar pattern exists in this plant species elsewhere in Europe and see if a similar adaptation has occurred in other species.

“The other interesting aspect would be to see if plants’ future evolution could be reversible, which will again make them more attractive to the pollinators and practice less selfing,” Acoca-Pidolle said.

New Phytologist, 2023. DOI: 10.1111/nph.19422

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big-evolutionary-change-tied-to-lots-of-small-differences

Big evolutionary change tied to lots of small differences

Cracking the eggs —

Lots of genes changed as a species of snail went from laying eggs to live births.

Image of a dark, grey-black snail shell.

Enlarge / An example of a Littorina species, the common periwinkle.

The version of evolution proposed by Charles Darwin focused on slow, incremental changes that only gradually build into the sort of differences that separate species. But that doesn’t rule out the potential for sudden, dramatic changes. Indeed, some differences make it difficult to understand what a transitional state would look like, suggesting that a major leap might be needed.

A new study looks at one major transition: the shift from egg-laying to live births in a set of related snail species. By sequencing the genomes of multiple snails, the researchers identified the changes in DNA that are associated with egg-laying. It turns out that a large number of genes are associated with the change despite its dramatic nature.

Giving up eggs

The snails in question are in a genus called Littorina, which are largely distributed around the North Atlantic. Many of these species lay eggs, but a number of them have transitioned to live births. In these species, an organ that coats eggs with a protein-rich jelly in other species instead acts as an incubator, allowing eggs to develop until young snails can crawl out of their parent’s shells. This is thought to be an advantage for animals that would otherwise have to lay eggs in environments that aren’t favorable for their survival.

The egg laying species are so similar to their relatives that they were sometimes thought to just be a variant of an egg-laying species. All of which suggests that live birth has evolved relatively recently, giving us a good opportunity to understand the genetic changes that enabled it.

So, a large international team of researchers sequenced the genomes of over 100 individual snails, both egg-laying and live birth. The resulting data was used to analyze things like how closely related different species are, and what genetic changes are associated with live birth.

The results suggest that there are two separate clusters of species that reproduce through live births. Put differently, on an evolutionary tree of these snail species, there’s a branch full of egg-laying species separating two groups that give birth to live snails. Typically, this structure is viewed as an indication that live births evolved twice, once for each of the two clusters.

But that doesn’t seem to be the case here, for reasons that we’ll get into.

Lots of variations

Separately, the researchers looked for regions of the genome that are associated with giving live births. And they found lots of them—88 in total. These 88 regions were identified in both clusters of live-birth species, and the DNA sequences within them were very similar. This suggests that these regions had a single origin and were maintained in both these lineages.

One possibility to explain this is that a population of live-birth animals reverted to egg-laying at some point in their evolution. Alternatively, hybridization between egg-layers and live-birthers could have let these variations spread within an egg-laying population and ultimately re-enable live births when enough of them were present in individual animals, producing a separate live-birth lineage.

The 88 regions identified as underlying live births have very little genetic diversity, suggesting that a specific genetic variant in each region is so advantageous that it swept through the population, displacing all other versions of the stretch of DNA. They have, however, picked up some distinct variations that are rare outside the egg-laying populations—enough to allow the researchers to estimate the age when these pieces of DNA came under evolutionary selection.

The answer varies depending on which of the 88 segments you’re looking at, but it ranges from about 10,000 to 100,000 years ago. That range suggests that the genetic regions that enable live births were put together gradually over many years—exactly as the traditional view of evolution suggests.

The researchers acknowledge that at least some of these regions are likely to have evolved after live births were already the norm and simply improve the efficiency of the internal incubation. And there’s no way to know how many variants (or which) need to be present before live births are possible. However, the researchers now have an extensive list of genes to look into to understand things better.

Science, 2024. DOI: 10.1126/science.adi2982  (About DOIs).

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This bird is like a GPS for honey

Show me the honey —

The honeyguide recognizes calls made by different human groups.

A bird perched on a wall in front of an urban backdrop.

Enlarge / A greater honeyguide

With all the technological advances humans have made, it may seem like we’ve lost touch with nature—but not all of us have. People in some parts of Africa use a guide more effective than any GPS system when it comes to finding beeswax and honey. This is not a gizmo, but a bird.

The Greater Honeyguide (highly appropriate name), Indicator indicator (even more appropriate scientific name), knows where all the beehives are because it eats beeswax. The Hadza people of Tanzania and Yao people of Mozambique realized this long ago. Hadza and Yao honey hunters have formed a unique relationship with this bird species by making distinct calls, and the honeyguide reciprocates with its own calls, leading them to a hive.

Because the Hadza and Yao calls differ, zoologist Claire Spottiswoode of the University of Cambridge and anthropologist Brian Wood of UCLA wanted to find out if the birds respond generically to human calls, or are attuned to their local humans. They found that the birds are much more likely to respond to a local call, meaning that they have learned to recognize that call.

Come on, get that honey

To see which sound the birds were most likely to respond to, Spottiswoode and Wood played three recordings, starting with the local call. The Yao honeyguide call is what the researchers describe as “a loud trill followed by a grunt (‘brrrr-hm’) while the Hadza call is more of “a melodic whistle,” as they say in a study recently published in Science. The second recording they would play was the foreign call, which would be the Yao call in Hadza territory and vice versa.

The third recording was an unrelated human sound meant to test whether the human voice alone was enough for a honeyguide to follow. Because Hadza and Yao voices sound similar, the researchers would alternate among recordings of honey hunters speaking words such as their names.

So which sounds were the most effective cues for honeyguides to partner with humans? In Tanzania, local Hadza calls were three times more likely to initiate a partnership with a honeyguide than Yao calls or human voices. Local Yao calls were also the most successful in Mozambique, where, in comparison to Hadza calls and human voices, they were twice as likely to elicit a response that would lead to a cooperative effort to search for a beehive. Though honeyguides did sometimes respond to the other sounds, and were often willing to cooperate when hearing them, it became clear that the birds in each region had learned a local cultural tradition that had become just as much a part of their lives as those of the humans who began it.

Now you’re speaking my language

There is a reason that honey hunters in both the Hadza and Yao tribes told Wood and Spottiswoode that they have never changed their calls and will never change them. If they did, they’d be unlikely to gather nearly as much honey.

How did this interspecies communication evolve? Other African cultures besides the Hadza and Yao have their own calls to summon a honeyguide. Why do the types of calls differ? The researchers do not think these calls came about randomly.

Both the Hadza and Yao people have their own unique languages, and sounds from them may have been incorporated into their calls. But there is more to it than that. The Hadza often hunt animals when hunting for honey. Therefore, the Hadza don’t want their calls to be recognized as human, or else the prey they are after might sense a threat and flee. This may be why they use whistles to communicate with honeyguides—by sounding like birds, they can both attract the honeyguides and stalk prey without being detected.

In contrast, the Yao do not hunt mammals, relying mostly on agriculture and fishing for food. This, along with the fact that they try to avoid potentially dangerous creatures such as lions, rhinos, and elephants, and can explain why they use recognizably human vocalizations to call honeyguides. Human voices may scare these animals away, so Yao honey hunters can safely seek honey with their honeyguide partners. These findings show that cultural diversity has had a significant influence on calls to honeyguides.

While animals might not literally speak our language, the honeyguide is just one of many species that has its own way of communicating with us. They can even learn our cultural traditions.

“Cultural traditions of consistent behavior are widespread in non-human animals and could plausibly mediate other forms of interspecies cooperation,” the researchers said in the same study.

Honeyguides start guiding humans as soon as they begin to fly, and this knack, combined with learning to answer traditional calls and collaborate with honey hunters, works well for both human and bird. Maybe they are (in a way) speaking our language.

Science, 2023.  DOI: 10.1126/science.adh412

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Otherworldly mini-Yellowstone found in the deep sea

Follow the crabs —

We’ve known about deep ocean vents for a while, but it’s still hard to find them.

A large collection of white crabs arrayed across rocks on the bottom of the ocean.

Enlarge / “Leading us like breadcrumbs…” A trail of squat lobsters helped researchers locate previously unknown hydrothermal vents. The hydrothermal vents create chemosynthetic ecosystems, so in areas that are mostly barren of life, the appearance of larger animals can be an indicator of vents nearby.

Spectacular scenery, from lush rainforests to towering mountain ranges, dots the surface of our planet. But some of Earth’s most iconic landmarks––ones that may harbor clues to the origin of life on Earth and possibly elsewhere––lay hidden at the bottom of the ocean. Scientists recently found one such treasure in Ecuadorian waters: a submerged mini Yellowstone called Sendero del Cangrejo.

This hazy alien realm simmers in the deep sea in an area called the Western Galápagos Spreading Center––an underwater mountain range where tectonic plates are slowly moving away from each other. Magma wells up from Earth’s mantle here to create new oceanic crust in a process that created the Galápagos Islands and smaller underwater features, like hydrothermal vents. These vents, which pump heated, mineral-rich water into the ocean in billowing plumes, may offer clues to the origin of life on Earth. Studying Earth’s hydrothermal vents could also offer a gateway to finding life, or at least its building blocks, on other worlds.

The newly discovered Sendero del Cangrejo contains a chain of hydrothermal vents that spans nearly two football fields. It hosts hot springs and geyser chimneys that support an array of creatures, from giant, spaghetti-like tube worms to alabaster Galatheid crabs.

The crabs, also known as squat lobsters, helped guide researchers to Sendero del Cangrejo. Ecuadorian observers chose the site’s name, which translates to “Trail of the Crabs,” in their honor.

“It did feel like the squat lobsters were leading us like breadcrumbs, like we were Hansel and Gretel, to the actual vent site,” said Hayley Drennon, a senior research assistant at Columbia University’s Lamont-Doherty Earth Observatory, who participated in the expedition.

The Iguanas Vent Field, where the team did some sampling.

Enlarge / The Iguanas Vent Field, where the team did some sampling.

The joint American and Ecuadorian research team set sail aboard the Schmidt Ocean Institute’s Falkor (too) research vessel in mid-August in search of new hydrothermal vents. They did some mapping and sampling on the way to their target location, about 300 miles off the west coast of the Galápagos.

The team used a ‘Tow-Yo’ technique to gather and transmit real-time data to the crew aboard the ship. “We lowered sensors attached to a long wire to the seafloor, and then towed the wire up and down like a yo-yo,” explained Roxanne Beinart, an associate professor at the University of Rhode Island and the expedition’s chief scientist. “This process allowed us to monitor changes in temperature, water clarity, and chemical composition to help pinpoint potential hydrothermal vent locations.”

When they reached a region that seemed promising, they deployed the remotely operated vehicle SuBastian for a better look. Less than 24 hours later, the team began seeing more and more Galatheid crabs, which they followed until they found the vents.

The crabs were particularly useful guides since the vent fluids there are clear, unlike “black smokers” that create easy-to-see plumes. SuBastian explored the area for about 43 hours straight in the robot’s longest dive to date.

But the true discovery process spanned decades. Researchers have known for nearly 20 years that the area was likely home to hydrothermal activity thanks to chemical signals measured in 2005. About a decade later, teams ventured out again and collected animal samples. Now, due to the Schmidt Ocean Institute’s recent expedition, scientists have the most comprehensive data set ever for this location. It includes chemical, geological, and biological data, along with the first high-temperature water samples.

“It’s not uncommon for an actual discovery like this to take decades,” said Jill McDermott, an associate professor at Lehigh University and the expedition’s co-chief scientist. “The ocean is a big place, and the locations are very remote, so it takes a lot of time and logistics to get out to them.” The team will continue their research onshore to help us understand how hydrothermal vents influence our planet.

Genesis from hell?

Sendero del Cangrejo may compare to a small-scale Yellowstone in some ways, but it’s no tourist destination. It’s pitch-black since sunlight can’t reach the deep ocean floor. The crushing weight of a mile of water presses down from overhead. And the vents are hot and toxic. Some of them clocked in at 290º C (550º F)—nearly hot enough to melt lead.

Before scientists discovered hydrothermal vents in 1977, they assumed such extreme conditions would preclude the possibility of life. Yet that trailblazing team saw multiple species thriving, including white clams that guided them to the vents the same way the Galatheid crabs led the modern researchers to Sendero del Cangrejo.

A series of seafloor photos shows the sudden appearance of live white clams that led scientists to find hydrothermal vents for the first time.

A series of seafloor photos shows the sudden appearance of live white clams that led scientists to find hydrothermal vents for the first time.

Before the 1977 find, no one knew life could survive in such a hostile place. Now, scientists know there are microbes called thermophiles that can only live in high temperatures (up to about 120º C, or 250º F).

Bacteria that surround hydrothermal vents don’t eat other organisms or create energy from sunlight like plants do. Instead, they produce energy using chemicals like methane or hydrogen sulfide that emanate from the vents. This process, called chemosynthesis, was first identified through the characterization of organisms discovered at these vents. Chemosynthetic bacteria are the backbone of hydrothermal vent ecosystems, serving as a nutrition source for higher organisms.

Some researchers suggest life on Earth may have originated near hydrothermal vents due to their unique chemical and energy-rich conditions. While the proposal remains unproven, the discovery of chemosynthesis opened our eyes to new places that could host life.

The possibility of chemosynthetic creatures diminishes the significance of so-called habitable zones around stars, which describe the orbital distances between which surface water can remain liquid on a planet or moon. The habitable zone in our own Solar System extends from about Venus’ orbit out nearly to Mars’.

NASA’s Europa Clipper mission is set to launch late next year to determine whether there are places below the surface of Jupiter’s icy moon, Europa, that could support life. It’s a lot colder out there, well beyond our Solar System’s habitable zone, but scientists think Europa is internally heated. It experiences strong tidal forces from Jupiter’s gravity, which could create hydrothermal activity on the moon’s ocean floor.

Several other moons in our Solar System also host subsurface oceans and experience the same tidal heating that could potentially create habitable conditions. By exploring Earth’s hydrothermal vents, scientists could learn more about what to look for in similar environments elsewhere in our Solar System.

“The Ocean’s Multivitamin”

While hydrothermal vents are relatively new to science, they’re certainly not new to our planet. “Vents have been active since Earth’s oceans first formed,” McDermott said. “They’ve been present in our oceans for as long as we’ve had them, so about 3 billion years.”

During that time, they’ve likely transformed our planet’s chemistry and geology by cycling chemicals and minerals from Earth’s crust throughout the ocean.

“All living things on Earth need minerals and elements that they get from the crust,” said Peter Girguis, a professor at Harvard University, who participated in the expedition. “It’s no exaggeration to say that all life on earth is inextricably tied to the rocks upon which we live and the geological processes occurring deep inside the planet…it’s like the ocean’s multivitamin.”

But the full extent of the impact hydrothermal vents have on the planet remains unknown. In the nearly 50 years since hydrothermal vents were first discovered, scientists have uncovered hundreds more spread around the globe. Yet no one knows how many remain unidentified; there are likely thousands more vents hidden in the deep. Detailed studies, like those the expedition scientists are continuing onshore, could help us understand how hydrothermal activity influences the ocean.

ROV SuBastian takes water and chemical samples from a black smoker hydrothermal vent in the Iguanas Vent Field, Galapagos Islands.

Enlarge / ROV SuBastian takes water and chemical samples from a black smoker hydrothermal vent in the Iguanas Vent Field, Galapagos Islands.

The team’s immediate observations offer a good starting point for their continued scientific sleuthing.

“I actually expected to find denser animal populations in some places,” Beinart said.

McDermott thinks that could be linked to the composition of the vent fluids. “Several of the vents were clear—not very particle-rich,” she said. “They’re probably lower in minerals, but we’re not sure why.” Now, the team will measure different metal levels in water samples from the vent fluids to figure out why they’re low in minerals and whether that has influenced the animals the vents host.

Researchers are learning more about hydrothermal vents every day, but many mysteries remain, such as the eventual influence ocean acidification could have on vents. As they seek answers, they’re sure to find more questions and open up new avenues of scientific exploration.

Ashley writes about space as a contractor for NASA’s Goddard Space Flight Center by day and freelances as an environmental writer. She holds a master’s degree in space studies from the University of North Dakota and is finishing a master’s in science writing through The Johns Hopkins University. She writes most of her articles with one of her toddlers on her lap.

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Getting to the bottom of how red flour beetles absorb water through their butts

On the third day of Christmas —

A unique group of cells pumps water into the kidneys to help harvest moisture from the air.

Who <em>doesn’t</em> thrill to the sight of a microscopic cross-section of a beetle’s rectum? You’re welcome.” src=”https://cdn.arstechnica.net/wp-content/uploads/2023/03/beetle-butt-TOP-800×536.jpg”></img><figcaption>
<p><a data-height=Enlarge / Who doesn’t thrill to the sight of a microscopic cross-section of a beetle’s rectum? You’re welcome.

Kenneth Veland Halberg

There’s rarely time to write about every cool science-y story that comes our way. So this year, we’re once again running a special Twelve Days of Christmas series of posts, highlighting one science story that fell through the cracks in 2023, each day from December 25 through January 5. Today: red flour beetles can use their butts to suck water from the air, helping them survive in extremely dry environments. Scientists are honing in on the molecular mechanisms behind this unique ability.

The humble red flour beetle (Tribolium castaneum) is a common pantry pest feeding on stored grains, flour, cereals, pasta, biscuits, beans, and nuts. It’s a remarkably hardy creature, capable of surviving in harsh arid environments due to its unique ability to extract fluid not just from grains and other food sources, but also from the air. It does this by opening its rectum when the humidity of the atmosphere is relatively high, absorbing moisture through that opening and converting it into fluid that is then used to hydrate the rest of the body.

Scientists have known about this ability for more than a century, but biologists are finally starting to get to the bottom (ahem) of the underlying molecular mechanisms, according to a March paper published in the Proceedings of the National Academies of Science. This will inform future research on how to interrupt this hydration process to better keep red flour beetle populations in check, since they are highly resistant to pesticides. They can also withstand even higher levels of radiation than the cockroach.

There are about 400,000 known species of beetle roaming the planet although scientists believe there could be well over a million. Each year, as much as 20 percent of the world’s grain stores are contaminated by red flour beetles, grain weevils, Colorado potato beetles, and confused flour beetles, particularly in developing countries. Red flour beetles in particular are a popular model organism for scientific research on development and functional genomics. The entire genome was sequenced in 2008, and the beetle shares between 10,000 and 15,000 genes with the fruit fly (Drosophila), another workhorse of genetics research. But the beetle’s development cycle more closely resembles that of other insects by comparison.

Food security in developing nations is particularly affected by animal species like the red flour beetle which has specialized in surviving in extremely dry environments, granaries included, for thousands of years.

Enlarge / Food security in developing nations is particularly affected by animal species like the red flour beetle which has specialized in surviving in extremely dry environments, granaries included, for thousands of years.

Kenneth Halberg

The rectums of most mammals and insects absorb any remaining nutrients and water from the body’s waste products prior to defecation. But the red flour beetle’s rectum is a model of ultra-efficiency in that regard. The beetle can generate extremely high salt concentrations in its kidneys, enabling it to extract all the water from its own feces and recycle that moisture back into its body.

“A beetle can go through an entire life cycle without drinking liquid water,” said co-author Kenneth Veland Halberg, a biologist at the University of Copenhagen. “This is because of their modified rectum and closely applied kidneys, which together make a multi-organ system that is highly specialized in extracting water from the food that they eat and from the air around them. In fact, it happens so effectively that the stool samples we have examined were completely dry and without any trace of water.” The entire rectal structure is encased in a perinephric membrane.

Halberg et al. took took scanning electron microscopy images of the beetle’s rectal structure. They also took tissue samples and extracted RNA from lab-grown red flour beetles, then used a new resource called BeetleAtlas for their gene expression analysis, hunting for any relevant genes.

One particular gene was expressed sixty times more in the rectum than any other. Halberg and his team eventually honed in a group of secondary cells between the beetle’s kidneys and circulatory system called leptophragmata. This finding supports prior studies that suggested these cells might be relevant since they are the only cells that interrupt the perinephric membrane, thereby enabling critical transport of potassium chloride. Translation: the cells pump salts into the kidneys to better harvest moisture from its feces or from the air.

Model of the beetle's inside and how it extracts water from the air.

Enlarge / Model of the beetle’s inside and how it extracts water from the air.

Kenneth Halberg

The next step is to build on these new insights to figure out how to interrupt the beetle’s unique hydration process at the molecular level, perhaps by designing molecules that can do so. Those molecules could then be incorporated into more eco-friendly pesticides that target the red flour beetle and similar pests while not harming more beneficial insects like bees.

“Now we understand exactly which genes, cells and molecules are at play in the beetle when it absorbs water in its rectum. This means that we suddenly have a grip on how to disrupt these very efficient processes by, for example, developing insecticides that target this function and in doing so, kill the beetle,” said Halberg. “There is twenty times as much insect biomass on Earth than that of humans. They play key roles in most food webs and have a huge impact on virtually all ecosystems and on human health. So, we need to understand them better.”

DOI: PNAS, 2023. 10.1073/pnas.2217084120  (About DOIs).

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